There is usually some sort of server or session management interface, allowing you to set up and store your connection information for a particular FTP server, and then re-connect to that server easily. Most FTP client programs use a similar interface. We no longer recommend FileZilla, since it was found to contain malware in a recent update. To connect to your GNPS user account via FTP, simply log on to the FTP server at, using the same username and password as your GNPS web account. This is because the web-based upload interface is optimized for quick uploads of small files, whereas for the much larger files, FTP is much more stable and robust. Once you have a GNPS account, it is strongly recommended that you use FTP to upload your dataset files to your account, as opposed to the GNPS web interface. If you have not yet done so please follow these instructions. To upload data, this requires you to have already created a GNPS account.
If you are looking for making your dataset publicly available on MassIVe please check the Create a Public Dataset section FTP Batch File Uploads ¶
We offer as an alternative an online browser drag and drop that is limited to small files. The one big downside is that you have to have to install an FTP client if you don't already have one. This provides a robust and batch manner to upload many files. To upload files to GNPS for analysis, the preferred method is to use an FTP client. Molecular Networking - Analog Discovery in Microbial Extractsįeature-Based Molecular Networking (FBMN) with MZmine2 - Microbiome Molecules in Fecal Samples in American Gut ProjectįBMN with MS-DIAL - Microbiome Molecules in Fecal Samples in American Gut Project Open-source Method for Reference Library Generationĭata Acqusition - Thermo QExactive (v1.0) Reference Spectral Library mzVault Addition Reference Spectral Library Batch Addition MS2LDA and MotifDB Substructure DiscoveryĪdd/Curate Reference Spectrum in the Library GC-MS Library Search and Molecular Networking
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